species:   Rhsol
pid:       PID0459
parent:    Rhi-milR-77
paralog:   
locus:     KB317696.1:795409-795502
matures:   ['GCGGGAUUGCAGUACAAAGGGAGA', 'CCCGUUGUGCUCAUUCUGCUG']
srr:       SRR1994871
genome:    /Users/jax/+Genomes/Fungal_genomes/Rhsol.AFRT00000000.1_scaffolds.fa
alignment: /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram
call:      samtools view /media/data/njohnson/+SeqLibraries/FunHP_libraries/Lin2016-hq.SRR1994871.cram KB317696.1:795409-795502

0 out of bounds
6 alignments
6 proper strand
6 stranded perfect matches

                             ************************** *****************************         
CAGCCGAGUUUGGCUUGACAGUUGCAGCUAUCCCCGUUGUGCUCAUUCUGCUGAUUGGAUGCGGGAUUGCAGUACAAAGGGAGAUCAAAUGGCU
.(((((....)))))..........((((((((((.(((((((((((((((.........)))))).)).))))))).))).))).....))))
------------------------------------------------------------GCGGGAUUGCAGUACAAAGGGAGA---------- l=24 a=0 c
--------------------------------CCCGUUGUGCUCAUUCUGCUG----------------------------------------- l=21 a=0 c*
----------------------------------------------------------AUGCGGGAUUGCAGUACAAAGGGAGAU--------- l=27 a=2 ma
-------------------------------CCCCGUUGUGCUCAUUCUGCUGAU--------------------------------------- l=24 a=0 ma*

-----------------------------------------------CUGCUGAUUGGAUGCGGGAUUGCAGU--------------------- l=26 a=1 
------------------------------------------------UGCUGAUUGGAUGCGGGAUUGCAG---------------------- l=24 a=1 
---------------------------------------------------------GAUGCGGGAUUGCAGUACAAAGGGAG----------- l=26 a=1 
----------------------------------------------------------AUGCGGGAUUGCAGUACAAAGGGAGAU--------- l=27 a=2 (ma)
-------------------------------------------------------------CGGGAUUGCAGUACAAAGGGAGAU--------- l=24 a=1 

mb-01011
ax-1001001
ku-01
ss-101011101100
fn-011
